Skip to main content
OpenTrials
Recruiting

NCT Number: NCT07484945

Multiomics Approach in Adult Patients With Phenylketonuria

The GENOPHEN study aims to explore the links between the genome, metabolomic profile, and clinical phenotype in adults with early-treated PKU.

Recruiting

Interested in participating?

Request Info

Key information

About this study

  • There is a wide clinical variability among PKU patients. Even siblings can present discrepancies regarding the phenotype. The reasons for that are not completely known. There are over 3,300 variants of the PAH gene, some of which influence the severity of the disease, but their impact in adulthood remains poorly understood. Other genes (SLC7A5, HULC, DNAJC12, SHANK family) could also modulate the phenotype.

Working Hypotheses:

  • Some genetic variants influence the severity of neuropsychological and systemic disorders in adults with early-treated PKU.
  • Metabolomic analysis of sera will identify new biomarkers correlated with the severity of the disease.

Methodology:

  • The study is based on the ECOPHEN cohort (187 adult PKU patients followed for 5 years), of which 150 will provide a DNA sample from saliva for whole-genome sequencing.
  • Genetic variants will be sought and correlated with clinical, biological, and neuropsychological data.
  • A non-targeted metabolomic analysis by LC-MS/MS will be performed on the sera, then the metabolic profiles will be associated with phenotypes and genotypes.

Objectives and Expected Outcomes:

  • Better understand the heterogeneity of the disease in adulthood.
  • Identify associations between genetic variants, metabolic profiles, and clinical evolution.
  • Pave the way for personalized management and new therapeutic approaches for adult PKU patients.

Who can participate

Healthy volunteers accepted: No

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

  • PKU patients over the age of 18,
  • diagnosed through the newborn screening program,
  • patients who participated in the final visit of the ECOPHEN study,
  • affiliation with a health insurance plan,
  • informed consent dated and signed by patients for DNA analysis (saliva sample)

Exclusion criteria

  • Patients whose PKU diagnosis was not detected during neonatal screening,
  • Patients who have not signed a dated informed consent form,
  • Patients who are unable to provide a saliva sample.

Treatment and study plan

Primary outcomes

  1. Identification of metabolite clusters

    Time frame: Enrolment

    untargeted metabolomic analysis of plasma samples collected during the ECOPHEN study Phenylalanine level (> 900 µmol/L, 900-600 µmol/L, < 600 µmol/L), response to BH4 (Complete response: decrease in Phe levels after treatment leading to normalization of Phe levels; partial response: 30% decrease without normalization; non-responder: decrease of less than 30% in Phe levels.)

  2. Identification of genetic variants DNAJC12, HULC, SLC7A5, and SHANK and other ones

    Time frame: Enrolment

    genome sequencing of DNA collected from saliva samples during the GENOPHEN study.

    The DNAJC12, HULC, SLC7A5, and SHANK (SHANK1, SHANK2, and SHANK3) variants will be listed and classified as frequent (allele frequency > 1%) or rare (allele frequency < 1%) according to the gnomAD database. The same will apply to other variants potentially identified by genome sequencing.

Secondary outcomes

  1. Number of patients with neurological complications

    Time frame: Enrolment

  2. average intelligence quotient (IQ)

    Time frame: Enrolment

    WAIS IV results identified in the ECOPHEN cohort study (>= 130 : Very superior; 120-129 Superior; 110-119 High average; 90-109 Average; 80-89 : Low average; 70-79 Borderline; =< 69 Extremely low)

  3. California Verbal Learning Test

    Time frame: Enrolment

    CVLT results identified in the ECOPHEN cohort study. There is no minimum or maximum score; it is a "raw" score.

  4. Trail Making Test

    Time frame: Enrolment

    TMT results identified in the ECOPHEN cohort study. This is the number of seconds it takes to finish connecting the points on a "path" consisting of 25 points; the lower the number, the better (the patient is faster), but there isn't really a minimum and no maximum.

  5. Beck Depression Inventory

    Time frame: Enrolment

    BDI test results identified in the ECOPHEN cohort study The score ranges from 0 to 63, with the following qualitative interpretations: 0-13: minimal depression; 14-19: mild depression; 20-28: moderate depression; 29-63: severe depression

  6. Weight changes

    Time frame: Time of enrollment

    Body mass index (Kg/m2)

  7. Bone mineral density changes

    Time frame: Enrolment

    Bone mineral density, measured by DWA, expressed as Z-scores

Study contacts

Contact information is provided by the study sponsor or research team.

François MAILLOT, Pr

CONTACT

[email protected]

2.47.47.37.15 ext. +33

Sponsors and collaborators

Lead sponsor

University Hospital, Tours

Other

Registry information

Official study title

Relationships Between the Genome and Metabolomic and Phenomic Signatures in Adult Patients With Early-Treated Phenylketonuria: a Multicenter Cross-sectional Study

Acronym: GENOPHEN

Important dates

Study start
2026
Primary completion
2028
Study completion
2028
First posted
Mar 20, 2026
Registry last updated
May 6, 2026

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

Published trials that share one or more normalized conditions with this study.