Microbiome and Clinical Response to Probiotics and Methotrexate in Early Psoriasis: a Pilot Study

This study aims to identify the changes in gut microbiome and the clinical impact induced by treatment of newly diagnosed psoriasis patients with probiotics and methotrexate, compared to the standard first line treatment with methotrexate alone.

Methods

• Collection of demographic and clinical data:

• Data about the full medical history will be collected for all patients (including name, age, sex, history of the disease, duration of illness, association with other autoimmune diseases like vitiligo, diabetes type 1, etc).
• Data about the results of full clinical examination of all patients will be collected.
• Data about the clinical assessment of the severity of Psoriasis will be collected as indicated by the Psoriasis Activity and Severity Index (PASI) score (which is a quantitative rating score for measuring the severity of psoriatic lesions based on area coverage and plaque appearance). PASI score will be calculated before treatment and every month during treatment. (Appendix 1)
• Data about base line pretreatment laboratory investigations will be collected: CBC, liver and renal function test.
• Data about follow up lab investigations will be collected:

• CBC at week 2 and week 4 after treatment and every month thereafter.
• Liver function tests at week 2 after treatment and every month thereafter.
• Renal function tests at week 1 after treatment and every month thereafter.
• Stool samples will be collected from every participant at baseline (before the start of treatment) and at the end of the 16th week of treatment (at the efficacy of treatment assessment visit). Samples will be stored in sterile screw-capped tubes, and kept at -80 ºC, till the time of subsequent experiments.
• Total DNA will be isolated from stool samples using QIAamp DNA Stool Mini Kit following the manufacturer's instructions.
• Illumina Next generation sequencing: The microbiota composition will be determined by amplification of the V3 and V4 hypervariable regions of the 16S rRNA gene using universal primers with Illumina compatible adaptors.

• 16S Metagenomic Sequencing Library will be prepared according to the Illumina Protocol.
• Bioinformatic analysis of 16S rRNA amplicon sequencing data will be performed for classification of reads at taxonomic levels.
• Changes in microbiome profiles of participants will be determined and correlated with the clinical outcome of treatment.
• Statistical analysis: The obtained results from the cases the controls will be statistically analyzed using the appropriate statistical methods.

Inclusion criteria

• Newly diagnosed patients with chronic plaque psoriasis.

Exclusion criteria

• • Psoriatic patients who used systemic treatments at least 3 months before the study, with the exception of acetritin use, in the last 3 years.

• Patients who have skin infection or other skin or autoimmune diseases such as SLE, Lichen planus, Dermatomyositis and Vitiligo, by history and examination.
• Pregnant or Lactating mothers.
• Patients with any contraindication to methotrexate treatment.
• Patients who develop any adverse reaction during systemic treatment with methotrexate that necessitates cessation of treatment before the 16th week, such as bone marrow suppression as indicated by CBC, elevated liver enzymes, or severe GIT upset.
• Patients with low intellectual capacity, uneducated patients, or patients unable or unwilling to provide daily feedback about their compliance to the provided probiotics treatment.