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NCT Number: NCT05196789

Diagnosis and Phenotype Characterisation Using Genomics in Patients With Inherited Bone Marrow Failure (IBMDx Study)

This project seeks to perform whole genome sequence (WGS) and whole transcriptome sequence (WTS) analysis on 350 patients with suspected inherited bone marrow failure syndromes and related disorder (IBMFS-RD) in order to increase the genomic diagnostic rate in IBMFS.

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Key information

Age range

3 month and older

Sex eligibility

All sexes

Study type

Observational

Primary location

Peter MacCallum Cancer Centre

Melbourne, Victoria, Australia

Location status: Recruiting

About this study

IBMFS-RD are a heterogeneous group of rare diseases resulting in significant morbidity and early mortality. These syndromes are individually and collectively rare (affecting <1 per 10,000 people) and a significant proportion are unexplained by mutations in known genes. Whilst rare, these familial conditions are also likely underdiagnosed due to their relatively recent description and also due to lack of accessible genomic testing.

For patients with clinically suspected IBMFS-RD, receiving a genomic diagnosis is critical to:

  • Establish a precise and reliable diagnosis (including distinguishing a monogenic aetiology from more common acquired or autoimmune causes of bone marrow failure which have dramatically different treatments (e.g. immunosuppression)
  • Inform prognosis, clinical course, optimal treatment choice and screening for non-haematological organ dysfunction
  • Optimise allogeneic haematopoietic stem cell transplant (HSCT) chemotherapy conditioning and minimise regimen-related toxicity
  • Inform risk-benefit analysis of performing allogeneic HSCT to potentially prioritise other therapies (including novel gene therapy strategies)
  • Avoiding the catastrophe of HSCT donation from occult genetically affected relatives
  • Provide counselling (including stem cell donor counselling) and offer genetic testing for potentially affected family members
  • Provide accurate reproductive counselling and reproductive options to affected individuals

This study aims to provide WGS and WTS to a national cohort of patients with IBMFS-RD to determine diagnostic rate, health economic impact, health implementation challenges and other exploratory endpoints.

Who can participate

Healthy volunteers accepted: No

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

  • age ≥ 3 months
  • able to give informed consent (or parent/guardian able to give informed consent)
  • a clinicopathological diagnosis (or differential diagnosis) of inherited bone marrow failure syndrome or related disorder (IBMFS-RD) as per the study team

Exclusion criteria

  • A clinicopathological diagnosis of an acquired bone marrow failure syndrome (including acquired aplastic anaemia and hypoplastic myelodysplastic syndrome) as per the study team
  • Existing definitive genomic diagnosis for patient's haematological phenotype

Treatment and study plan

whole genome and transcriptome sequencing

Diagnostic Test

To perform whole genome/transcriptome analysis of patients in a cohort of up to 350 Australian patients with IBMFS-RD

Primary outcomes

  1. Definitive IBMFS-RD diagnosis

    Time frame: 3-12 months post baseline

    IBMFS-RD diagnosis - An initial analysis of a panel of ~100 genes of established relevance to IBMFS-RD phenotype will be performed on all patients. If no molecular diagnosis is made from the panel of genes, further analysis on the genomic data will be performed using the best practice analytical tools and techniques.

    All results will be communicated to patients.

Secondary outcomes

  1. Develop a whole transcriptome gene expression classifier

    Time frame: 4 years

    To develop a whole transcriptome gene expression classifier to aid diagnosis of IBMFS-RD.

  2. Cost-effectiveness of genomic testing in patients with suspected IBMFS-RD

    Time frame: 4 years

    The cost-effectiveness of genomic testing is assessed by the differences in costs and quality of life associated with genomic testings compared with standard of care. Costs being considered include direct medical costs incurred within the health system arising from utilisation of hospital services and drug dispensing. Quality of life is assessed by EORTC-QLQ-C30 version 3 and CHU9D questionnaires for adult and paediatric patients respectively.

  3. Budget-impact of genomic testing in patients with suspected IBMFS-RD

    Time frame: 4 years

    Evaluation of budget-impact of genomic testing includes examining the financial and operational sustainability as well as scalability of offering genomic testing beyond the trial period.

  4. Health implementation analyses regarding the acceptability of genomic testing

    Time frame: 4 years

    The acceptability of comprehensive and centralised genomic testing in IBMFS-RD to patients is measured by a patient acceptability questionnaire which assesses patients' view and understanding of genomic testing.

  5. Populate Registry

    Time frame: 4 years

    To populate the Aplastic Anaemia and Other Bone Marrow Failure Syndromes Registry (AAR, Monash University) with consenting patients with IBMFS-RD to facilitate long-term follow up.

Study contacts

Contact information is provided by the study sponsor or research team.

Kelsey Man, PhD

CONTACT

[email protected]

61 3 8559 5000

Piers Blombery, MBBS(Hons)

CONTACT

[email protected]

Sponsors and collaborators

Lead sponsor

Peter MacCallum Cancer Centre, Australia

Other

Collaborators

  • National Health and Medical Research Council, Australia
  • University of Melbourne

Registry information

Official study title

Diagnosis, Discovery and Novel Phenotype Characterisation Using Multimodal Genomics in Patients With Inherited Bone Marrow Failure and Related Disorders (IBMDx Study)

Acronym: IBMDx

Important dates

Study start
2022
Primary completion
2025
Study completion
2025
First posted
Jan 19, 2022
Registry last updated
Nov 7, 2024

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

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