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NCT Number: NCT06807307

Transcriptional Framework for the Molecular Diagnosis of Response to Immunotherapy in Lung Cancer With Agnostic Potential

Through genomic and transcriptomic sequencing techniques (whole exome sequencing, WES; whole transcriptome sequencing, WTS) patients with enrichment for KEAPness and specific gene interactions associated with it.

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Key information

Conditions

Age range

18 year and older

Sex eligibility

All sexes

Study type

Observational

Primary location

IRCCS National Cancer Institute "Regina Elena"

Rome, 00144, Italy

Location status: Recruiting

Location contact

Marcello Maugeri Saccà, Medical Doctor

CONTACT

[email protected]

+39 06 5266 6914 ext. +39

About this study

Retrospective-prospective, non-pharmacological, biological, multicenter observational study, for which the collection and use of tissue samples from patients suffering from NSCLC and/or other tumor types. Through genomic and transcriptomic sequencing techniques (whole exome sequencing, WES; whole transcriptome sequencing, WTS) patients with enrichment for KEAPness and specific gene interactions associated with it. Subsequently, through the same techniques, applied to different tumor regions taken from operating site it will be possible to identify the evolution of the tumor at a spatio-temporal level and the immune subtype associated with the presence/absence of KEAPness. Finally, cell lines will be used to recapitulate what was observed in the patient and per-patient cohorts identify new pharmacological vulnerabilities associated with the characteristics of KEAPness.

Who can participate

Healthy volunteers accepted: No

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

cohort (NSCLC-IC):

  • Age >18 years;
  • Histological diagnosis of NSCLC
  • metastatic disease
  • Availability, at the time of enrollment, of adequate biological material to be able to perform molecular analyses, taken (surgical or by biopsy) before administration of any anti-tumor treatment (chemotherapy and/or radiotherapy);
  • ECOG PS 0-2;
  • Adequate hematological, hepatic and renal function;
  • Measurable disease according to RECIST criteria
  • Availability of follow-up data for at least 6 months and/or until death/progression

Exclusion criteria

cohort (NSCLC-IC):

  • Previous systemic therapy for metastatic disease;
  • Comorbidities not controlled with adequate medical therapy.

Inclusion criteria

NSCLC-VC cohort:

  • Age >18 years;
  • Histological diagnosis of NSCLC
  • metastatic disease
  • Availability, at the time of enrollment, of adequate biological material to be able to perform molecular analyses, taken (during surgery and/or by biopsy) before administration of any anti-tumor treatment (chemotherapy and/or radiotherapy);
  • ECOG PS 0-2;
  • Adequate hematological, hepatic and renal function;
  • Measurable disease according to RECIST criteria;
  • Written informed consent (participation in the study and data processing)

Exclusion criteria

NSCLC-VC cohort:

  • Previous systemic treatment for metastatic disease;
  • Comorbidities not controlled with adequate medical therapy;

Treatment and study plan

Primary outcomes

  1. Innovative molecular tool

    Time frame: 24 months

    To generate an innovative molecular tool for prediction DNA/RNA will be extracted from 5μm FFPE tissue sections using the AllPrep DNA/RNA FFPE kit (Qiagen). The quality of the RNA will be evaluated with the Bioanalyzer, the integrity of genomic DNA through the Agilent NGS FFPE qPCR QC Kit (Agilent). The libraries for RNA-Seq will be prepared using the RNA TruSeq Exome Kit (Illumina). The quality of the libraries resulting will be checked using Bioanalyzer (high sensitivity DNA kit). The intermediate library before exon enrichment will be quantified with Qubit, the final library with qPCR. The samples will be sequenced in paired-end mode, sequencing 76 bp on each side. The Exome DNA sequencing will be performed using SureSelectXT Low Input Kit reagents for the initial preparation of the library followed by enrichment with Clinical Research Exome Kit (Agilent).

Secondary outcomes

  1. Tracing the evolutionary path

    Time frame: 24 months

    Tracing the evolutionary path of NRF-2 dependent tumors, in his association with the microenvironment, and in particular the related immune subtypes, and characterize the interactions between pairs of genes (epistatic) underlying the KEAPness.i phenotype, the multi-region sequencing technology that will be used involves the use of surgical samples, taken in a single session. This allows you to isolate different regions of the tumor, corresponding to different time points (central region, R1; expansion zone, R2; locoregional metastases, R3).

    Through this methodology it is possible to trace the evolution of the tumor over time, and in particular the interactions between pairs of mutant genes linked to the KEAPness phenotype.

  2. Identification of therapeutic vulnerabilities specific

    Time frame: 24 months

    Identification of therapeutic vulnerabilities specific to biological processes related to KEAPness. Cell lines derived from patients affected by NSCLC and GC, already available in the laboratories of Promoter/IFO, will initially be characterized by genomic sequencing and transcriptomic (WES and WTS) to identify the enrichment in the KEAPness phenotype and previously identified epistatic interactions.

Study contacts

Contact information is provided by the study sponsor or research team.

Marcello Maugeri Saccà, Medical Doctor

CONTACT

[email protected]

+39 06 5266 6914 ext. +39

Sponsors and collaborators

Lead sponsor

Regina Elena Cancer Institute

Other

Registry information

Official study title

KEAPnes: Transcriptional Framework for the Molecular Diagnosis of Response to Immunotherapy in Lung Cancer With Agnostic Potential

Acronym: KEAPnes

Important dates

Study start
2024
Primary completion
2026
Study completion
2026
First posted
Feb 4, 2025
Registry last updated
Feb 4, 2025

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

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