Skip to main content
OpenTrials
Recruiting

NCT Number: NCT06607523

The Gut-Brain Axis During Neurorehabilitation; Prebiotic Treatment to Alter the Gut Microbiome and Neurologic Symptoms

The aim of this study is to characterize the microbiome of patients undergoing post-acute residential neurorehabilitation compared to community controls and to determine if a dietary fiber, Inulin, can create a shift in the microbiome leading to changes in fatigue and cognition.

Recruiting

Interested in participating?

Request Info

Key information

Age range

18 year and older

Sex eligibility

All sexes

Study type

Interventional

Phase

Not applicable

Primary location

About this study

The investigative research team previously described Brain Injury Associated Fatigue and Altered Cognition (BIAFAC) as a treatable syndrome that occurs in a subset of patients following traumatic brain injury (TBI). In addition to fatigue and brain fog, BIAFAC patients have altered growth hormone (GH) secretion, reduced serum amino acid levels, and an altered (dysbiotic) gut microbiome. GH treatment dramatically improves patient symptoms but is not curative; symptoms return when GH treatment ends and the associated gut dysbiosis is not corrected. In preliminary work with mouse models created using human fecal transplants from clinical BIAFAC subjects, transplanting the dysbiotic gut bacteria from BIAFAC patients alone caused fatigue, altered cognition, and dysregulated GH secretion without any trauma or head injury. These mouse models indicate that gut dysbiosis has a causative role in the development of BIAFAC by triggering both altered GH secretion and neurologic symptoms. In this clinical trial a dietary fiber, Inulin, will be administered to patients undergoing neurorehabilitation after brain injury to create a shift in their microbiome.

Specific Aims

Aim 1. Identify differences in blood and fecal microbiome biomarkers of neurorehabilitation patients.

Specific Aim 1a. Identify differences in blood and fecal microbiome biomarkers between patients entering an inpatient post-acute neurorehabilitation program and community controls.

Specific Aim 1b. Identify correlations between biomarkers (blood and fecal microbiome), demographics (e.g. age, sex), and clinical factors (e.g. medical history) of post-acute neurorehabilitation patients.

Specific Aim 1c. Document longitudinal change in blood and fecal microbiome biomarkers of patients during inpatient post-acute neurorehabilitation.

Aim 2. Determine the effect of dietary inulin supplement on patients undergoing post-acute neurorehabilitation.

Specific Aim 2a. Determine how dietary inulin supplementation impacts the gut microbiome profile and function in brain injury patients during inpatient post-acute neurorehabilitation.

Specific Aim 2b. Determine if dietary inulin supplementation affects fatigue and cognition in patients during inpatient post-acute neurorehabilitation.

Aim 3. Determine if short-term early intervention dietary inulin supplementation during post-acute neurorehabilitation affects longer-term patient-reported outcomes.

Who can participate

Healthy volunteers accepted: Yes

Only the study team can determine whether someone qualifies for participation.

Brain Injury Patients

Inclusion

  • Ages 18 and above
  • Admitted to Moody Neurorehabilitation Institute for care
  • Less than 6 months post-injury
  • English speaking
  • Must be able to eat and drink by mouth
  • Willing and able to comply with study procedures
  • Willing and able to provide consent (with LAR if needed)

Exclusion

  • Significant heart, liver, kidney, blood or respiratory disease
  • HIV, Hepatitis B or Hepatitis C
  • Pregnancy or becoming pregnant during the study
  • History of inflammatory bowel disease
  • History of celiac disease
  • Active diverticular disease
  • Known allergy to study agent
  • Any medical condition that, in the opinion of the investigator, would place the subject at increased risk for participation

Community Control Subjects

Inclusion

  • Ages 18 and above
  • Have a family member who is admitted to Moody Neurorehabilitation Institute for care OR is working at Moody Neurorehabilitation Institute
  • English speaking
  • Willing and able to comply with study procedures
  • Willing and able to provide consent
  • FACs score ≤ 50

Exclusion

  • Trauma to head in last 6 months
  • Stroke in last 6 months
  • Significant heart, liver, kidney, blood or respiratory disease
  • HIV, Hepatitis B or Hepatitis C
  • Pregnancy or becoming pregnant during the study
  • History of inflammatory bowel disease
  • History of celiac disease
  • Active diverticular disease
  • Any medical condition that, in the opinion of the investigator, would place the subject at increased risk for participation

Treatment and study plan

Inulin

Dietary Supplement

Inulin, 4g twice daily for 42 days

Primary outcomes

  1. Quantify absolute abundance of gut microbiome using metagenomic analysis at baseline

    Time frame: baseline

    Metagenomic analysis using a custom PCR array will be performed on stool samples to identify associated changes in microbiome absolute abundance at the genus and species level.

  2. Quantify absolute abundance of gut microbiome using metagenomic analysis after 42 days of inulin supplementation

    Time frame: 42 days inulin treatment

    Metagenomic analysis using a custom PCR array will be performed on stool samples to identify associated changes in microbiome absolute abundance at the genus and species level.

  3. Quantify absolute abundance of gut microbiome using metagenomic analysis at 3 months of discontinuation of inulin

    Time frame: 3 months of discontinuation of inulin

    Metagenomic analysis using a custom PCR array will be performed on stool samples to identify associated changes in microbiome absolute abundance at the genus and species level.

  4. Quantify absolute abundance of gut microbiome using metagenomic analysis at 6 months of discontinuation of inulin

    Time frame: 6 months of discontinuation of inulin

    Metagenomic analysis using a custom PCR array will be performed on stool samples to identify associated changes in microbiome absolute abundance at the genus and species level.

  5. Fold change in relative abundance of gut microbiome using metatranscriptomic analysis from baseline to 42 days of inulin treatment

    Time frame: From baseline to 42 days of inulin treatment

    Metatranscriptomic analysis using a RNA seq will be performed on stool samples to identify associated fold changes in which genes are turned on and off.

  6. Fold change in relative abundance of gut microbiome using metatranscriptomic analysis from baseline to 3 months after discontinuation of inulin treatment

    Time frame: From baseline to 3 months after discontinuation of inulin treatment

    Metatranscriptomic analysis using a RNA seq will be performed on stool samples to identify associated fold changes in which genes are turned on and off.

  7. Fold change in relative abundance of gut microbiome using metatranscriptomic analysis from baseline to 6 months after discontinuation of inulin treatment

    Time frame: From baseline to 6 months after discontinuation of inulin treatment

    Metatranscriptomic analysis using a RNA seq will be performed on stool samples to identify associated fold changes in which genes are turned on and off.

Secondary outcomes

  1. Fatigue and Cognition as measured by the Fatigue and Altered Cognition Scale at baseline

    Time frame: baseline

    The Fatigue and Altered Cognition Scale (FACS) is a joint project from University of Texas Medical Branch and Texas A&M University. The FACS is a 20 question assessment designed to access perceived fatigue and cognition.

    There are 2 subscales used to calculate a total score. The subscales are: Fatigue and Altered Cognition. The total score is calculated by adding the subscales together. The range of the total score is 0-100, with a higher score indicating more fatigue and altered cognition.

  2. Fatigue and Cognition as measured by the Fatigue and Altered Cognition Scale after 42 days of inulin treatment

    Time frame: 42 days of inulin treatment

    The Fatigue and Altered Cognition Scale (FACS) is a joint project from University of Texas Medical Branch and Texas A&M University. The FACS is a 20 question assessment designed to access perceived fatigue and cognition.

    There are 2 subscales used to calculate a total score. The subscales are: Fatigue and Altered Cognition. The total score is calculated by adding the subscales together. The range of the total score is 0-100, with a higher score indicating more fatigue and altered cognition.

  3. Fatigue and Cognition as measured by the Fatigue and Altered Cognition Scale at 3 months after discontinuation of inulin

    Time frame: 3 months discontinuation of inulin

    The Fatigue and Altered Cognition Scale (FACS) is a joint project from University of Texas Medical Branch and Texas A&M University. The FACS is a 20 question assessment designed to access perceived fatigue and cognition.

    There are 2 subscales used to calculate a total score. The subscales are: Fatigue and Altered Cognition. The total score is calculated by adding the subscales together. The range of the total score is 0-100, with a higher score indicating more fatigue and altered cognition.

  4. Fatigue and Cognition as measured by the Fatigue and Altered Cognition Scale at 6 months discontinuation of inulin

    Time frame: 6 months discontinuation of inulin

    The Fatigue and Altered Cognition Scale (FACS) is a joint project from University of Texas Medical Branch and Texas A&M University. The FACS is a 20 question assessment designed to access perceived fatigue and cognition.

    There are 2 subscales used to calculate a total score. The subscales are: Fatigue and Altered Cognition. The total score is calculated by adding the subscales together. The range of the total score is 0-100, with a higher score indicating more fatigue and altered cognition.

Study contacts

Contact information is provided by the study sponsor or research team.

Christopher Danesi, MS

CONTACT

[email protected]

409-772-8126

Kate Randolph, BS

CONTACT

[email protected]

409-772-8126

Sponsors and collaborators

Lead sponsor

The University of Texas Medical Branch, Galveston

Other

Collaborators

  • Moody Neurorehabilitation Institute

Registry information

Important dates

Study start
2025
Primary completion
2028
Study completion
2028
First posted
Sep 23, 2024
Registry last updated
Dec 19, 2025

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

Published trials that share one or more normalized conditions with this study.