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NCT Number: NCT05319067

Study of Gut Microbiota Diversity in Children Aged 1-3 Years on Prolonged Antibiotic Prophylaxis for Grade 3 or Higher Vesicoureteral Reflux Compared With 2 Age-matched Control Groups

Urinary tract infections are very common in pediatrics. Urinary antibiotic prophylaxis is commonly used in children with malformative uropathies. Long-term, low-dose antibiotic prophylaxis with trimethoprim-sulfamethoxazole has been associated with a decrease in the number of urinary tract infections in susceptible children, but not systematically with a decrease in the risk of renal scarring (depending of uropathy stage).

Long-term antibiotic prophylaxis has implications for the acquisition of antibiotic resistance. A child receiving antibiotic prophylaxis for urinary tract infection is around 6 times more likely to develop a multidrug-resistant infection. In the general population, the microbiota of children treated with curative antibiotics is less diverse in terms of species and strains. In addition, short-term compositional changes are observed between consecutive samples of children treated with antibiotics.

The gut microbiota modulates the immune system, in particular via metabolites (SCFA, polysaccharide A) produced by bacteria that modify the expansion and function of regulatory T-cells. The disturbances of the intestinal microbiota play a role in the medium and long term on the acquisition of pathologies, such as atopy.

The study authors wish to describe the intestinal microbiota of children with vesico-ureteral reflux treated long-term with trimethoprim-sulfamethoxazole and compared it those not receiving antibiotic prophylaxis and to healthy children.

Recruiting

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Key information

Age range

1 year–3 year

Sex eligibility

All sexes

Study type

Observational

Primary location

CHU de Montpellier, Montpellier, France

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Who can participate

Healthy volunteers accepted: Yes

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

  • The patient must be a member or beneficiary of a health insurance plan
  • Patient with no objection to participation in the study from the parent or guardian
  • Child with a diversified diet.

o Specific inclusion criteria for group 1 (cases):

  • Child with grade 3 or higher vesicoureteral reflux.
  • Child on trimethoprim-sulfamethoxazole therapy for at least 5 months.

o Specific inclusion criteria for group 2 (controls):

  • Child with uropathy and without long-term trimethoprim-sulfamethoxazole treatment.

o Specific inclusion criteria for group 3 (healthy controls):

  • Child without uropathy or long-term trimethoprim-sulfamethoxazole treatment.

Exclusion criteria

  • Chronic digestive pathology
  • Acute gastroenteritis or infectious colitis within last 15 days.
  • Curative antibiotic therapy taken less than one month ago.
  • Chronic inflammatory bowel disease or other localizations
  • Congenital or acquired immune deficiency (current treatment with methotrexate, biotherapies, immunosuppressants)
  • Patient participating in a category 1 trial likely to modify the intestinal microbiota.
  • Patient in an exclusion period determined by another study.
  • Patient under court protection, guardianship or curatorship.
  • Patient for whom it is impossible to give informed information to person with parental authority.

Treatment and study plan

Stool sampling

Other

Stool sample taken at home 24 hours before hospital visit

Primary outcomes

  1. α-diversity of the gut microbiota between groups

    Time frame: Day 0

    N index of a stool sample measured by the Shannon index (H^') which incorporates the total number of different Operational Taxonomic Units and the relative proportions of these Operational Taxonomic Units.

Secondary outcomes

  1. The β-diversity of the gut microbiota between groups

    Time frame: Day 0

    Operational Taxonomic Units measured by Bray Curtis Index

  2. The number of bacterial genera present in the gut microbiota between groups

    Time frame: Day 0

    Relative abundance Operational Taxonomic Units present

  3. The prevalence of multi-resistant bacteria

    Time frame: Day 0

    % of isolated bacteria producing extended spectrum betalactamase, carbapenemase-producing Enterococcus faecium and glycopeptide-resistant Enterococcus faecium and bacteria resistant to trimethoprim-sulfamethoxazole

Study contacts

Contact information is provided by the study sponsor or research team.

Anne Filleron

CONTACT

[email protected]

04.66.68.32.86

Sponsors and collaborators

Lead sponsor

Centre Hospitalier Universitaire de Nīmes

Other

Registry information

Acronym: PROPHYBIOTA

Important dates

Study start
2022
Primary completion
2027
Study completion
2028
First posted
Apr 8, 2022
Registry last updated
Apr 15, 2026

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

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This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.