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NCT Number: NCT07483476

Study of Cell-free DNA in Children and Adolescents With Acute Lymphoblastic Leukemia

Minimal residual disease (MRD) monitoring is a key prognostic factor in pediatric acute lymphoblastic leukemia (ALL). Currently, MRD assessment relies mainly on cellular DNA obtained from bone marrow aspirates. Although highly informative, this approach has limitations, including the need for invasive procedures and the fact that it reflects only the bone marrow compartment.

Tumor cells release fragments of genomic DNA into the bloodstream, known as circulating cell-free DNA (cfDNA). In solid tumors, cfDNA analysis has emerged as a valuable non-invasive biomarker for disease monitoring and treatment response. Recent studies have shown that cfDNA is detectable in pediatric ALL.

This study aims to investigate whether plasma cfDNA analysis could represent an alternative or complementary approach to bone marrow-based MRD assessment. cfDNA may better reflect the global tumor burden across the entire body and allow more frequent longitudinal monitoring during treatment.

The primary objective is to assess the correlation between MRD measured in plasma cfDNA and MRD measured in bone marrow cellular DNA at two key timepoints of treatment: the end of induction (Day 29) and the end of consolidation (Day 71-78).

Secondary objectives include evaluating the correlation between peripheral blood cellular DNA and bone marrow MRD, describing clonal evolution using cfDNA throughout treatment and follow-up, exploring the concordance of genomic alterations detected in cfDNA and other biological compartments, assessing the prognostic value of cfDNA MRD for relapse risk and event-free survival, and characterizing cfDNA fragmentome and methylome signatures in patients compared with healthy controls.

The study will include children and adolescents with newly diagnosed ALL treated at two AP-HP pediatric hematology centers, as well as a control cohort of healthy children undergoing HLA typing for sibling stem cell transplant.

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Key information

Who can participate

Healthy volunteers accepted: Yes

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

ALL population

  • Age < 18 years
  • Newly diagnosed B-cell or T-cell acute lymphoblastic leukemia
  • Absence of BCR::ABL1 rearrangement
  • For infants (<12 months), absence of KMT2A rearrangement
  • Inclusion before initiation of corticosteroid therapy or chemotherapy
  • Written informed consent from legal guardians
  • Affiliation to a national health insurance system Control population
  • Age < 18 years
  • Undergoing blood sampling for HLA typing in the context of bone marrow donor evaluation
  • Sibling of a patient with leukemia
  • Written informed consent from legal guardians
  • Affiliation to a national health insurance system

Exclusion criteria

  • Pregnant or breastfeeding patients
  • Patients not affiliated with a health insurance system

Treatment and study plan

Biological sample collection

Other

Additional peripheral blood samples will be collected during treatment and follow-up for cell-free DNA analysis. Residual samples from bone marrow and cerebrospinal fluid collected as part of standard clinical care will also be analyzed.

Primary outcomes

  1. Correlation between plasma cfDNA MRD and bone marrow MRD

    Time frame: Up to day 78 (end of consolidation)

    Pearson correlation coefficient between minimal residual disease (MRD) measured in plasma circulating cell-free DNA and MRD measured in bone marrow cellular DNA. Analyses will be performed according to the type of molecular target used for MRD detection (IG/TCR rearrangements, genomic breakpoints, or pathogenic variants).

    End of induction (Day 29) and end of consolidation (Day 71-78)

Secondary outcomes

  1. Correlation between peripheral blood cellular DNA MRD and bone marrow MRD

    Time frame: At day 29

    Pearson correlation coefficient between MRD measured in peripheral blood cellular DNA and MRD measured in bone marrow cellular DNA.

  2. Correlation between peripheral blood cellular DNA MRD and bone marrow MRD

    Time frame: At day 78

    Pearson correlation coefficient between MRD measured in peripheral blood cellular DNA and MRD measured in bone marrow cellular DNA.

    At day 71 to 78

  3. Clonal evolution detected in cell-free DNA

    Time frame: At day 1

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up

  4. Clonal evolution detected in cell-free DNA

    Time frame: At day 4

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up

  5. Clonal evolution detected in cell-free DNA

    Time frame: At day 8

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up

  6. Clonal evolution detected in cell-free DNA

    Time frame: At day 15

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up

  7. Clonal evolution detected in cell-free DNA

    Time frame: At day 29

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up

  8. Clonal evolution detected in cell-free DNA

    Time frame: At day 78

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up At day 71 to 78

  9. Clonal evolution detected in cell-free DNA

    Time frame: At end of maintenance

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up

  10. Clonal evolution detected in cell-free DNA

    Time frame: 3 years after remission

    Mutation profiles of cfDNA across multiple timepoints during treatment and follow-up

  11. Concordance of genomic alterations between cfDNA and other biological compartments

    Time frame: At diagnosis

    Qualitative and quantitative comparison of genomic alterations detected at diagnosis in cfDNA and in other sample types (bone marrow, cerebrospinal fluid, and other tissues if available)

  12. Prognostic value of cfDNA MRD

    Time frame: Up to 5 years of follow-up

    Association between cfDNA MRD levels and relapse-free survival and event-free survival

  13. Fragmentome and methylome profiles of circulating DNA

    Time frame: Up to 5 years

    Characterization and comparison of cfDNA fragment size patterns and methylation signatures between patients and healthy controls at diagnosis and during treatment.

    At baseline and during treatment

Study contacts

Contact information is provided by the study sponsor or research team.

Jérôme Lambert, MD PhD

CONTACT

[email protected]

+330142499742 ext. +33

Marion Strullu, MD PhD

CONTACT

[email protected]

+330140035388 ext. +33

Sponsors and collaborators

Lead sponsor

Assistance Publique - Hôpitaux de Paris

Other

Registry information

Official study title

Etude de l'ADN Libre Circulant Dans Les leucémies Aigues Lymphoblastiques de l'Enfant et de l'Adolescent

Acronym: CIRCALL

Important dates

Study start
2026
Primary completion
2029
Study completion
2034
First posted
Mar 19, 2026
Registry last updated
Mar 19, 2026

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

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