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NCT Number: NCT07625059

Stanford University Microbiome Bank

This protocol establishes a centralized stool donor bank and research platform to support microbiota transplantation therapy (MTT) for microbiota-mediated diseases. The study will characterize donor microbiome, metabolite, immune, and dietary profiles.

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Key information

Age range

18 year–80 year

Sex eligibility

All sexes

Study type

Observational

Primary location

Stanford University

Palo Alto, California, 94305, United States

Location contact

Roujheen Sabetan, MPH

CONTACT

[email protected]

650-498-8188

Sean Spencer, MD, PHD

PRINCIPAL_INVESTIGATOR

About this study

Eligible participants will undergo comprehensive baseline screening including physical examination, infectious disease testing, and health history assessment. Those who qualify will enter an active donation period of up to 12 months, during which they will provide stool samples at a frequency ranging from once per month to once per week, depending on their availability.

In addition to stool collection, participants will provide biospecimens including blood draws (for infectious disease and metabolic monitoring), saliva samples, and small intestinal fluid samples collected using an ingestible capsule device (CapScan). The CapScan capsule is swallowed by the participant, collects intestinal fluid as it passes through the small intestine, and is retrieved from stool and returned to the research team for analysis.

This biobank will serve as infrastructure for ongoing microbiome research, providing rigorously screened and comprehensively characterized biospecimens to advance understanding of the gut microbiome's role in health and disease, and to support development of safe and effective microbiota-based therapies.

Who can participate

Healthy volunteers accepted: Yes

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

  • Provision of signed and dated informed consent form
  • Stated willingness to comply with all study procedures and availability for the duration of the study
  • Any person aged 18-80 years of age, inclusive at the time of signing the consent
  • In good general health as evidenced by medical history
  • Ability to travel to donation facility on a weekly basis
  • Residence within 5 miles of Stanford Campus
  • For females of reproductive potential: use of highly effective contraception for at least 1 month prior to screening and agreement to use such a method during study participation
  • Capable of providing signed informed consent.

Exclusion criteria

  • Inflammatory bowel disease
  • Enteric infections
  • Previous infection with Clostridium difficile
  • History of gastrointestinal surgery: Participants with gastrointestinal surgeries below the pylorus will be excluded from this protocol, including participants with a history of colectomy, segmental colonic resection, and small bowel resections.
  • Documented severe gastroparesis
  • Active intestinal obstruction
  • Dysphagia (oropharyngeal, esophageal, functional or neuromuscular)
  • History or current malignancy diagnosis
  • History of recurrent aspiration episodes
  • Any conditions associated with a high risk of bleeding, including but not limited to coagulopathy/bleeding disorder, severe liver disease, active or recent GI bleeding, or recent abdominal or other GI surgery
  • Active diagnosis of major depressive disorder
  • Active diagnosis of major anxiety disorder
  • Severe immunodeficiency, inherited or acquired (e.g., Human immunodeficiency virus, active chemotherapy or immunosuppressive medications [including steroids, biologic therapy, or bone marrow suppressive agents], or radiation therapy)
  • BMI of less than 18 or BMI greater than 30
  • Record of eating disorders
  • Active use of GLP-1 inhibitors
  • Diagnosis of Human immunodeficiency virus infection; Hepatitis A, B, C & E; Epstein Bar Virus; parasitic infections; Syphilis
  • Pregnancy & lactation
  • Active drug, or alcohol use disorder
  • Tobacco, marijuana and e-cigarette use
  • Any other significant medical condition that could confound or interfere with evaluation of safety or tolerability or prevent compliance with the study protocol at the discretion of the Investigator

Prior/concomitant therapy

  • Active antibiotic use
  • Active treatment with high levels of immunosuppressive therapies (active chemotherapy or immunosuppressive medications [including steroids, biologic therapy, or bone marrow suppressive agent], or radiation therapy)
  • Simultaneous participation in another interventional clinical trial

Other exclusion criteria

-Inability to comply with research requirements

Treatment and study plan

Microbiome bank

Other

This is an observational study with no interventions.

Primary outcomes

  1. Donor Eligibility Rate

    Time frame: During screening period

    Proportion of screened individuals who meet eligibility criteria for stool donation

Secondary outcomes

  1. Microbiome Diversity of Donors

    Time frame: Baseline and every 60 days through study completion, up to 12 months

    Alpha diversity (e.g., Shannon index) of stool samples from eligible donors

Study contacts

Contact information is provided by the study sponsor or research team.

Roujheen Sabetan, MPH

CONTACT

[email protected]

650-498-8188

Sponsors and collaborators

Lead sponsor

Sean Spencer

Other

Collaborators

  • GI Diseases Fund
  • Kepner Microbiome Fund
  • Mischa Deeter Research Fund

Registry information

Acronym: SUMB

Important dates

Study start
2026
Primary completion
2027
Study completion
2027
First posted
Jun 4, 2026
Registry last updated
Jun 4, 2026

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

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