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NCT Number: NCT07376018

Ketogenic Diet and Neuromodulation in Treatment Resistant Depression

The goal of this clinical trial is to test whether combining a ketogenic diet (KD) with personalized, accelerated intermittent theta burst stimulation (iTBS) produces greater reductions in depressive symptoms than iTBS combined with a standard healthy diet in adults with treatment-resistant depression. The trial also aims to determine whether participants can feasibly follow a ketogenic diet during an accelerated iTBS treatment course and whether the diet produces measurable changes in ketone levels.

Specifically, the study aims to determine whether the combined intervention:

1. Reduces depressive symptoms 2. Increases circulating ketone levels 3. Is feasible and tolerable during accelerated iTBS treatment

Participants will begin either a KD or a Canadian Food Guide-aligned diet (CFGD) with a 3-week dietary lead-in period, after which they will undergo a course of personalized, accelerated iTBS while continuing their assigned diet. Before and after the iTBS treatment course, participants will complete clinical assessments, provide blood samples for metabolic testing, and undergo MRI scans to assess brain connectivity. Ketone levels will be measured daily throughout the 12-week dietary intervention. Within-group and between-group differences will be compared to characterize changes in clinical outcomes, metabolism, and brain functioning.

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Key information

Age range

18 year–65 year

Sex eligibility

All sexes

Study type

Interventional

Phase

Not applicable

Primary location

Sunnybrook Health Sciences Centre

Toronto, Ontario, M4N 3M5, Canada

Location contact

Sean M Nestor, M.D., PhD

CONTACT

[email protected]

416-347-0257

Who can participate

Healthy volunteers accepted: No

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

  • Age 18-65 of any sex, gender identity, ethnicity and socioeconomic status
  • Currently experiencing a major depressive episode as defined by DSM-5-TR criteria and confirmed by a study physician
  • Presenting with at least moderate symptom severity (MADRS ≥ 20)
  • Meeting criteria for treatment-resistant depression (TRD), defined as non-response to at least two adequate antidepressant trials
  • Neuromodulation-naïve (no past rTMS or electroconvulsive therapy)
  • Able to provide informed consent
  • Available for the 15-week intervention and willing to follow either a ketogenic or Canadian Food Guide-aligned diet

Exclusion criteria

  • Medical/psychiatric co-morbidities that prevent participation in the study or where depression is not the primary psychiatric symptom of concern
  • History of epilepsy, stroke, or major neurological conditions, psychosis, or substance dependence within the last 6 months
  • Physical or cognitive disability interfering with participation
  • Females who are pregnant (self-report or via blood work), nursing, or planning a pregnancy during the timespan of the study BMI < 20 kg/m²
  • Suicide attempts in the past 12 months
  • Active suicidal intent as confirmed by study psychiatrist
  • Active eating disorder in the past 12 months
  • Currently following a KD
  • Habitual low-carb diet in the past 6 months
  • GI disorders or food allergies incompatible with dietary protocols
  • Alcohol use >3 drinks/day or >14/week
  • Use of anticonvulsants (benzodiazepines with a dose of <2 lorazepam equivalents will be permitted), GABA agonists, or medications reducing TMS efficacy
  • Serious medical illness
  • Contraindications to MRI
  • Unwillingness to perform daily finger-stick testing

Treatment and study plan

Accelerated Intermittent Theta Burst Stimulation (iTBS)

Device

Intermittent theta burst stimulation (iTBS), a form of repetitive transcranial magnetic stimulation (rTMS), is a non-invasive brain stimulation technique approved by the FDA and Health Canada for the treatment of TRD. In this study, participants will receive an accelerated course of image-guided, neuronavigated left dorsolateral prefrontal cortex (DLPFC) iTBS targeted based on functional connectivity with the subgenual anterior cingulate cortex (sgACC). Stimulation will consist of 600 pulses per session, delivered at 110% of resting motor threshold, with 50-minute inter-session intervals, for 8 sessions per day over 5 consecutive days.

Other names: repetitive transcranial magnetic stimulation (rTMS)

Primary outcomes

  1. Change in Depression Score on the Montgomery-Asberg Depression Rating Scale (MADRS)

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Change in depression symptomatology as assessed by the clinician-rated Montgomery-Asberg Depression Rating Scale (MADRS) (range 0-60). Higher scores indicate worse outcomes (greater severity of depressive symptoms)

  2. Changes in Ketone Levels

    Time frame: Baseline through week 12

    Change in fasting morning β-hydroxybutyrate concentrations over the treatment period relative to baseline. Fasting β-hydroxybutyrate will be measured daily via finger-stick ketone testing, and longitudinal change will be analyzed across the treatment period.

  3. Safety and Tolerability

    Time frame: Baseline through week 12

    Frequency, severity, and relatedness of adverse events and clinically significant laboratory abnormalities, and discontinuations due to adverse effects, with specific attention to KD-related effects (e.g., hypoglycemia, dehydration, electrolyte disturbances, gastrointestinal symptoms, dyslipidemia) and mood destabilization/suicidality.

Secondary outcomes

  1. Changes in ¹H-MRS Neurochemical Metabolites

    Time frame: Baseline to Week 4 (post-iTBS)

    Proton magnetic resonance spectroscopy will quantify changes in metabolites associated with neuroplasticity and metabolic function. Metabolite concentrations will be compared from baseline to post-treatment to determine whether nutritional ketosis enhances neurochemical responses to iTBS.

  2. Changes in Resting-State Functional Connectivity

    Time frame: Baseline to Week 4 (post-iTBS)

    Resting-state fMRI will be used to assess changes in intrinsic functional connectivity within fronto-cingulate and fronto-striatal networks. Connectivity between the individualized DLPFC stimulation target and the subgenual anterior cingulate cortex will be quantified. Baseline-to-post-treatment changes will be used to evaluate diet-related enhancement of iTBS-induced network modulation.

  3. Changes in Task-Evoked Brain Activation

    Time frame: Baseline to Week 4 (post-iTBS)

    Task-based fMRI will be used to measure changes in activation within predefined mood-regulation circuits. Contrast maps from an emotional processing task will be compared from baseline to post-treatment to assess neural circuit engagement associated with iTBS combined with dietary intervention.

  4. Changes in Metabolic Biomarkers

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Changes in fasting metabolic and inflammatory biomarkers across the study period. Biomarkers include HbA1C, fasting glucose, lipid profile, total protein, albumin, total bilirubin, ALT, AST, ALP, electrolytes, urea, calcium, BDNF, IL-6, TNF-α, and C-reactive protein (CRP), with pregnancy testing (hCG) in females where applicable.

  5. Change in Secondary Depression Scores

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Baseline grid-version of the 17-item Hamilton Depression Rating Scale (HDRS) score. The HDRS is a 17-item clinician-administered rating scale designed to assess severity of depressive symptoms. The score range is 0 to 52, with higher score indicating more severe depression.

  6. Change in Self-Reported Depressive Symptoms

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Self-reported depressive symptom severity will be assessed using the PHQ-9 with changes measured from baseline to each assessment point through the end of treatment. Higher scores on the PHQ-9 (0-27) represent greater depressive severity.

  7. Functional Disability

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Functional disability will be measured using the WHODAS 2.0, with changes evaluated from baseline to the end of treatment. Higher WHODAS scores indicate greater impairment.

  8. Well-being

    Time frame: Baseline, Day (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Well-being will be evaluated using the WHO-5 Well-Being Index, measured from baseline to the end of treatment. Higher WHO-5 scores represent better well-being.

  9. Change in Anxiety Measure

    Time frame: Baseline, Day (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Anxiety symptom severity will be assessed using the Generalized Anxiety Disorder-7 (GAD-7), with improvement examined from baseline to the end of treatment. Higher GAD-7 scores reflect more severe anxiety

  10. Anthropometric Outcomes

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Anthropometric outcomes, including BMI, waist circumference, and waist-to-hip ratio, will be recorded to evaluate changes in adiposity and fat distribution from baseline to the end of treatment. Higher waist-to-hip ratios indicate greater central adiposity.

  11. Physiological Measures

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Resting systolic/diastolic blood pressure and heart rate will be measured to assess physiological changes. Higher blood pressure values reflect worse cardiovascular status.

  12. Executive Functioning

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Executive functioning will be assessed using the NIH Toolbox Dimensional Change Card Sort Test and the Flanker Inhibitory Control and Attention Test, with changes evaluated from baseline to the end of treatment. Higher scores reflect better cognitive performance.

  13. Working Memory

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Working memory will be measured using the NIH Toolbox List Sorting Working Memory Test, with changes compared from baseline to post-treatment. Higher scores indicate stronger working memory ability.

  14. Episodic Memory

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Episodic memory will be assessed using the NIH Toolbox Auditory Verbal Learning Test and the Picture Sequence Memory Test, with changes evaluated from baseline to the end of treatment. Higher scores indicate better episodic memory performance.

  15. Processing Speed

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Processing speed will be evaluated using the NIH Toolbox Oral Symbol Digit Test and the Pattern Comparison Processing Speed Test, with changes assessed from baseline to post-treatment. Higher scores reflect faster processing speed.

  16. Treatment Expectancy

    Time frame: Baseline

    Treatment expectancy will be assessed using the Stanford Expectations of Treatment Scale (SETS), administered at baseline to evaluate participants' expectations prior to the intervention. Higher scores on the SETS indicate stronger positive treatment expectancy.

  17. Perceived Physical Capacity

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    The modified Rating of Perceived Exertion (RPE) scale will be used to assess participants' perceived physical effort and tolerance during routine physical activities and daily tasks. This subjective measure captures how hard the body feels it is working based on internal sensations such as breathing, cardiovascular strain, muscle fatigue, and overall exertion, providing an index of perceived functional capacity for physical activity.

  18. Objective Physical Capacity

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Objective indices of physical capacity and fatigue will be obtained using handgrip dynamometry. Maximal voluntary force (MVF) will be measured as the average of three maximal-effort trials, reflecting peak isometric grip strength and overall neuromuscular capacity of the hand and forearm muscles.

  19. Fatigue

    Time frame: Baseline, Day 5 (post-iTBS), Week 4 (post-iTBS), Week 8 (post-iTBS)

    Time to exhaustion (TTE) during a sustained submaximal grip task will be used to quantify fatigue resistance and endurance, defined as the duration for which participants can maintain a prescribed grip force before they are unable to sustain the target level.

Study contacts

Contact information is provided by the study sponsor or research team.

Jo Donguk, PhD

CONTACT

[email protected]

Sean M Nestor, M.D., PhD

CONTACT

[email protected]; [email protected]

416-347-0257

Sponsors and collaborators

Lead sponsor

Sunnybrook Health Sciences Centre

Other

Collaborators

  • Baszucki Group

Registry information

Official study title

Adjunctive Low-carb Ketogenic Diet to Enhance Imaging-guided Neuromodulation in Treatment Resistant Depression

Acronym: ALIGN

Important dates

Study start
2026
Primary completion
2027
Study completion
2027
First posted
Jan 29, 2026
Registry last updated
Feb 5, 2026

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

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