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NCT Number: NCT07215325

Got Doxy- 'Flipping the Script' on STI PEP

This study is being done to test the effects of doxycycline on inflammation and the bacteria in the body in people with HIV and in people on HIV pre-exposure prophylaxis. This drug is approved by the Food and Drug Administration (FDA) for the treatment of bacterial infections.

The study team will investigate whether the drug has additional effects on inflammation or on the bacteria that live in the body.

Recruiting

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Key information

Age range

18 year and older

Sex eligibility

Male

Study type

Interventional

Phase

Phase 4

Primary location

Grady Health System (non-CRN), Atlanta, Georgia, United States

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About this study

This project aims to determine the potential anti-inflammatory and microbiome effects of doxycycline when used as post-exposure prophylaxis (Doxy PEP) for sexually transmitted infections (STIs).

This study is important in the field of research because it allows the investigators to define the systemic and gut anti-inflammatory, microbiome, and resistome effects of doxycycline when used as post-exposure prophylaxis (Doxy PEP) for sexually transmitted infections. The study population that this study seeks to enroll consists of healthy people assigned male at birth, with and without HIV, who are willing to undergo study procedures.

Study procedures will include the collection of medical history, as well as biological specimen sampling, such as blood and rectal tissue biopsies.

The duration of this clinical trial for study participants will be approximately 12 weeks. This will include five in-person visits lasting about 45 minutes to 1 hour (including two biopsy visits).

This study will utilize data specimen banking for future research.

Who can participate

Healthy volunteers accepted: Yes

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

  • Age >18 years
  • Assigned male sex at birth
  • Good general health as assessed by a clinician at the screening study visit
  • For people with HIV, on suppressive antiretroviral therapy for at least 6 months with the most recent viral load documented <50 copies/ml and the most recent cluster of differentiation 4 (CD4)>300cells/ul
  • For people without HIV, taking oral daily, oral on-demand, or injectable pre-exposure prophylaxis for at least 3 months at the time of enrollment, with plans to continue for the duration of the study
  • Additional criteria apply

Exclusion criteria

  • Severe/uncontrolled comorbidities that could influence immune outcomes (e.g., diabetes, hypertension, co-infections), as assessed by the investigator.
  • History of inflammatory bowel disease (IBD) or other inflammatory, infiltrative, infectious, or vascular condition involving the lower GI tract that, in the judgment of the investigators, may be worsened by study procedures or may significantly distort the anatomy of the distal large bowel.
  • Known allergy to doxycycline
  • Use of any antibiotics within 3 months before screening
  • Significant lab abnormalities at baseline visit for rectal biopsies,
  • Continued need for the following medications during the study:
  • Aspirin
  • Warfarin, heparin (LMW or unfractionated), platelet aggregation inhibitors, or fibrinolytic agents
  • Any form of rectally administered agent besides products (lubricants or douching) used for sexual intercourse
  • NSAIDS within 72 hours of rectal sampling procedures
  • Continued need for, or use during the 90 days before enrollment, of the following medications:
  • Systemic immunomodulatory agents
  • Supraphysiologic doses of corticosteroids, except for short-course corticosteroids <7 days duration at the discretion of the investigator. (Gender affirming hormone therapy is not exclusionary.)
  • Use of experimental medications, vaccines, or biologicals in the 12 months before enrollment

Treatment and study plan

Doxycycline monohydrate 200 mg

Drug

Doxycycline monohydrate 200 mg (two 100 mg tablets) is used to treat or prevent infections that are strongly suspected to be caused by bacteria. Doxycycline monohydrate is an antimicrobial drug indicated for the treatment of bacterial infections, including sexually transmitted diseases. Centers for Disease Control and Prevention (CDC) recommends its use as post-exposure prophylaxis (PEP).

Blood and rectal mucosal samples will be collected before doxycycline is initiated. Participants will be instructed to take 200 mg of doxycycline by mouth every Monday, Wednesday, and Friday. Additional doses of doxycycline will be permitted on other days if sex without a condom occurs per CDC guidance. After 12 weeks of at least three-weekly doxycycline, blood and rectal mucosal samples will be collected for immunologic and microbiome/resistome assays.

Other names: Doxycycline

observation

Other

Standard of care. Blood and rectal mucosal samples.

Other names: Standard of Care

Primary outcomes

  1. Composite inflammation score

    Time frame: Baseline and 12 weeks after the start of doxycycline administration

    A composite inflammation score in the blood and rectal secretions before and after doxy-PEP will be calculated for each participant: +1 point for each proinflammatory cytokine (IP-10, IL-1β, tumor necrosis factor (TNF-α), Monocyte chemoattractant protein-1 (MCP-1), IL-17A, IL-6, interferon (IFN-γ), IL-12p70, IL-8) that was in the top quartile concentration and -1 point for each anti-inflammatory cytokine (IL-4, IL-10), T-cell growth factor (TGF-β1) that was in the top quartile concentration for a maximum score of 9 and minimum score of -3.

Secondary outcomes

  1. Tetracycline (TCN) Gene Abundance

    Time frame: Baseline and 12 weeks after the start of doxycycline administration

    TCN gene-level abundance will be normalized using reads per kilobase per genome equivalent (RPKG), calculated from filtered contigs and estimated genome equivalents (MicrobeCensus). RPKG values will be summed by resistance class, sub-class (e.g., inactivation, target modification, efflux), and by host assignment (pathogen vs. commensal). Group differences in mean TCN RPKG values will be evaluated using non-parametric permutation tests.

  2. Estimated mass of antimicrobial resistance (AMR) Genes

    Time frame: Baseline and 12 weeks after the start of doxycycline administration

    To benchmark normalized abundance, the mass of AMR genes will be estimated using spike-in controls (ZymoBIOMICS). This will provide a quantitative measure of the total AMR gene burden per sample. Group differences in total AMR gene mass will be tested using non-parametric permutation tests.

Study contacts

Contact information is provided by the study sponsor or research team.

Colleen Kelley, MD, MPH

CONTACT

[email protected]

404-712-1823

Sponsors and collaborators

Lead sponsor

Emory University

Other

Collaborators

  • National Institute of Allergy and Infectious Diseases (NIAID)

Registry information

Official study title

The Effects of Doxycycline on Inflammation and the Microbiome: 'Flipping the Script' on STI PEP

Important dates

Study start
2025
Primary completion
2029
Study completion
2029
First posted
Oct 10, 2025
Registry last updated
Apr 30, 2026

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

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