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NCT Number: NCT06463262

Exploration of Personalized Biomarkers During Neoadjuvant Radiation Therapy for Spinal and Sacral Chordoma

In this study the investigators will study the effects of neoadjuvant radiation therapy (RT), in the form of either proton therapy or stereotactic body radiation therapy (SBRT), on the Circulating tumor DNA (ctDNA), radiographic changes and radiomics, and the validity of these findings will be compared using the current gold standard- pathologic findings. The purpose of this work is to explore whether the biomarkers may be used diagnostically to better understand radiographic changes following RT. The investigators hypothesize that ctDNA levels in combination with imaging biomarkers identified through radiomics will be a sensitive and specific tool for predicting histopathologic response to RT.

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Key information

Age range

18 year and older

Sex eligibility

All sexes

Study type

Observational

Primary location

Johns Hopkins Hospital, Baltimore, Maryland, United States

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Who can participate

Only the study team can determine whether someone qualifies for participation.

Inclusion criteria

  • Age ≥18 years
  • Histologically proven chordoma of the skull base, spine, or sacrum (coccyx lesions are eligible).
  • Radiographic evidence of spinal sacral chordoma is required and may be obtained from computed tomography imaging and/or magnetic resonance imaging. Other studies may be used with principal investigator approval.

Note: Patients enrolled in Dr. Chetan Bettegowda's J1576 study, (IRB00075499) may be considered eligible for this trial. The J1576 study enrolls patients who have been diagnosed with Chordoma. Prior to enrollment, all patients must be consented specifically for participation in this Chordoma study (IRB00291203).

  • Treating physician must deem that neoadjuvant proton therapy or SBRT is appropriate treatment for the chordoma.
  • Surgical resection with curative intent must be planned.
  • The patient must have a Karnofsky Performance Score of 40 or greater.
  • If a woman is of child-bearing potential, a negative urine or serum pregnancy test must be demonstrated prior to treatment. Women of childbearing potential and men must agree to use adequate contraception (hormonal or barrier method of birth control; abstinence) for the duration of study participation and for up to 12 weeks following the study. Should a woman become pregnant or suspect she is pregnant while participating in this study she should inform her treating physician immediately.
  • Ability to understand and the willingness to sign a written informed consent document.

Exclusion criteria

  • Prior radiation or radiosurgery to the involved level of the spine.
  • Patients with metastatic disease will be excluded.
  • Prior malignancies are excluded except for adequately treated basal cell or squamous cell skin cancer, cervical carcinoma in situ, or other cancer from which the patient has been disease free for at least 1 year.
  • Patients with uncontrolled intercurrent illness including, but not limited to, ongoing or active infection, symptomatic congestive heart failure, unstable angina pectoris, cardiac arrhythmia, or psychiatric illness/social situations that would limit compliance with study requirements will be excluded.
  • Pregnant women are excluded. Women of child-bearing potential who are unwilling or unable to use and acceptable method of birth control to avoid pregnancy for the entire study period and up to 12 weeks after the study are excluded. Male subjects must also agree to use effective contraception for the same period as above.

Treatment and study plan

ctDNA

Diagnostic Test

the effects of neoadjuvant RT, in the form of either proton therapy or SBRT, on the ctDNA

Primary outcomes

  1. Sensitivity and specificity of combining ctDNA and radiomics

    Time frame: within one week after surgery

    Sensitivity and specificity of combining ctDNA and radiomic features in predicting histopathologic changes at surgery defined by patients who have <10% necrosis, the percentage of patients who are deemed "positive" by the model based on ctDNA and radiomics

Secondary outcomes

  1. Percent of necrotic and active tumor cells

    Time frame: within one week after surgery

    Percent of necrotic and active tumor cells following neoadjuvant RT using proton therapy or SBRT according to the Johns Hopkins Solid Tumor Panel Next Generation Sequencing

  2. Change in plasma ctDNA levels

    Time frame: within one week after surgery

    Change in plasma ctDNA levels following neoadjuvant RT for spinal chordoma and correlate changes in ctDNA levels with histopathologic changes at surgery

  3. Correlate radiomic features with histopathologic and genomic features

    Time frame: within one week after surgery

    Correlate radiomic features with histopathologic and genomic features in patients receiving neoadjuvant RT for spinal and sacral chordoma

  4. Radiographic local recurrence

    Time frame: within one week after surgery

    Radiographic local recurrence defined as evidence of progressive disease on CT/MRI in the operative site when compared to post-op imaging.

  5. Rate of wound healing complications

    Time frame: within one week after surgery

    Rate of wound healing complications following neoadjuvant RT for spinal chordoma

  6. Health related quality of life as assessed by the European Organization for Research and Treatment of Cancer (EORTC) quality of life (QLQ-C15-PAL) questionnaire

    Time frame: within one week after surgery

    Health related quality of life following neoadjuvant RT for spinal chordoma measured by the European Organization for Research and Treatment of Cancer (EORTC) quality of life (QLQ-C15-PAL) questionnaire. The scoring ranges from 0-21, with 21 being the highest quality of life.

  7. Local progression free survival

    Time frame: 3 years

    Local progression free survival following neoadjuvant RT for spinal chordoma

  8. Overall survival

    Time frame: 3 years

    Overall survival following neoadjuvant RT for spinal chordoma

  9. Relationship between ctDNA post-op and local Progression Free Survival (PFS)

    Time frame: 3 years

    The relationship between circulating tumor DNA post-operatively and local PFS following neoadjuvant RT for spinal chordoma

  10. Relationship between ctDNA post-op and Overall Survival (OS)

    Time frame: 3 years

    The relationship between circulating tumor DNA post-operatively and OS following neoadjuvant RT for spinal chordoma

  11. Toxicity of neoadjuvant RT as assessed by CTCAE version 5

    Time frame: 3 years

    Toxicity of neoadjuvant RT for chordoma using CTCAE version 5

Study contacts

Contact information is provided by the study sponsor or research team.

Jasmine Brooks, BA

CONTACT

[email protected]

6673068335

Kristin Redmond, MD, MPH

CONTACT

[email protected]

4106141642

Sponsors and collaborators

Lead sponsor

Sidney Kimmel Comprehensive Cancer Center at Johns Hopkins

Other

Collaborators

  • Canon Medical Systems, USA

Registry information

Acronym: Canon

Important dates

Study start
2024
Primary completion
2029
Study completion
2031
First posted
Jun 17, 2024
Registry last updated
Oct 24, 2025

OpenTrials presents study information sourced from ClinicalTrials.gov. The official registry record should be consulted for the latest information.

View the official ClinicalTrials.gov record (opens in a new tab)

This listing is for discovery and informational purposes only. It is not medical advice, does not guarantee that a study is recruiting, and does not determine eligibility. Contact the study team and a qualified healthcare professional when considering participation.

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